PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G164100.1
Common NameB456_013G164100, LOC105783114
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 240aa    MW: 26442.9 Da    PI: 6.7979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G164100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.9e-1179126454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++  rE+ RRdr+N++f eL  +l +    + +K +K++iL  Av+ + +L
  Gorai.013G164100.1  79 SKACREKLRRDRLNDKFMELGAILEPG---RPPKTDKSAILVDAVRMVTQL 126
                         5678**********************8...89**************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.45575126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-778131No hitNo description
PfamPF000102.0E-879126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1279139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1380149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-881132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1704.4E-4140174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVPPENPSYW SHFDYSTLID DIPVPDGPYT GFSWSTQPTN APSTAVNVEV DNSFGDLDGL  60
TESGSKKRGR SESCNPSSSK ACREKLRRDR LNDKFMELGA ILEPGRPPKT DKSAILVDAV  120
RMVTQLRDEA QKMKDSNSSL QERIKELKAE KNELREEKQR LKAEKEKLEQ QLKTMNAQPS  180
FMPPAPAIPS AFAAAAAQGQ AHGNKLVPFF GYPGVAMWQF MPPAAVDTSQ DHVLRPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463784.11e-179PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-106ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0D2VG891e-179A0A0D2VG89_G
STRINGVIT_19s0014g05100.t011e-117(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.14e-80bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]